Fan Filter Units (FFUs) are widely deployed in Class A/B cleanrooms for biopharmaceuticals, lithium electrode workshops, semiconductor, precision optics, clean booths, weighing rooms and other controlled clean environments. Numerous engineering cases reveal that many FFUs deliver good performance in standalone sample tests, yet suffer from frame leakage, uneven air velocity, excessive noise, premature fan failure, early filter clogging and disrupted unidirectional airflow after ceiling installation. Most failures are not caused by poor component quality, but unreasonable selection of housing, fan static pressure matching, sealing method, flow equalization structure and control system in the design phase. Based on abundant FFU project experience from Bacclean, this paper disassembles the complete FFU system, analyzes component selection logic, distinguishes between ordinary industrial conditions and GMP aseptic requirements, sorts out frequent engineering defects and rectification solutions for purification designers, contractors and procurement specialists.